WORKING
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FunMappOne
Input
Plot Maps
1. Input gene lists
1) Organisms
human
mouse
rat
2) GeneID
symbols
ensemble
entrez
3) Choose Excel File
Browse...
2. Functional annotation parameters
Select Functional Annotation
KEGG
REACTOME
GO
Select GO
BP
CC
MF
Choose Values Type
Pvalue
GenesModifications
GenesModifications_PValue
P-value threshold:
0.001
0.005
0.01
0.02
0.03
0.04
0.05
0.06
0.07
0.08
0.09
Annotated genes only
Only significant
Minumum number of genes in the intersection:
3. Display parameters
Aggregation Function
min
max
mean
median
Correction Method
gSCS
fdr
bonferroni
Nominal
Plot modification
value
sign
Generate Map
1. Data Selection
Browse hierarchy: choose a level
1
2
3
2. Plot section
Show categories
Keep aspect ratio
Plot Map
3. Download Selection
Width
Height
Download
4. Clustering Selection
Select aggregation method
ward
complete
single
Select distance
euclidean
jaccard
jaccard+euclidean
Cluster Samples
Reset Cluster
5. Download enriched term lists as excel file
Download
Use scrollbars to navigate and see the whole map
Heatmap
Enrichment Table
Heatmap Genes
Clustering
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Choose a hierarchy level
1
2
3
Show Values
logFC
P-Value
Combined
Plot
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